Gene AccessionOs01g0198200
LocationChr1: 5329063-5335518 (-)
Length6456 bp
IC4R LinksExpression; Homology; Variation; Literature; Wiki
Organism
Synonym-
Uniprot InfoProtein name synonym:
  • -
Entry name2seq:
  • Q0JPV8_ORYSJ
Sequence[Download] [View]
Exon(s) number13
Exons & Introns
Length (bp)StrandStartEndPhaseGC (%)Purine (%)Sequence
exon_156-5333485533354050.057.143[view]
intron_1122-5333363533348429.50836.066[view]
exon_256-5333307533336246.42951.786[view]
intron_285-5333222533330635.29435.294[view]
exon_372-5333150533322143.05656.944[view]
intron_387-5333063533314939.0844.828[view]
exon_495-5332968533306244.21147.368[view]
intron_497-5332871533296726.80436.082[view]
exon_567-5332804533287038.80659.701[view]
intron_588-5332716533280335.22740.909[view]
exon_6130-5332586533271551.53846.154[view]
intron_677-5332509533258525.97440.26[view]
exon_7219-5332290533250842.00952.511[view]
intron_7547-5331743533228935.10147.166[view]
exon_8140-5331603533174250.062.143[view]
intron_869-5331534533160234.78346.377[view]
exon_9175-5331359533153338.28648.0[view]
intron_9591-5330768533135840.60943.824[view]
exon_1091-5330677533076740.65959.341[view]
intron_10908-5329769533067632.26951.872[view]
exon_11158-5329611532976848.10154.43[view]
intron_11122-5329489532961033.60747.541[view]
exon_12189-5329300532948844.97455.026[view]
intron_1271-5329229532929933.80342.254[view]
exon_13133-5329096532922836.84254.135[view]
Sequence[Download] [View]
Exon(s) number7
Exons & Introns
Length (bp)StrandStartEndPhaseGC (%)Purine (%)Sequence
exon_1296-5332290533258537.83849.324[view]
intron_1547-5331743533228935.10147.166[view]
exon_2140-5331603533174250.062.143[view]
intron_269-5331534533160234.78346.377[view]
exon_3175-5331359533153338.28648.0[view]
intron_3591-5330768533135840.60943.824[view]
exon_491-5330677533076740.65959.341[view]
intron_4908-5329769533067632.26951.872[view]
exon_5158-5329611532976848.10154.43[view]
intron_5122-5329489532961033.60747.541[view]
exon_6189-5329300532948844.97455.026[view]
intron_671-5329229532929933.80342.254[view]
exon_7166-5329063532922836.74754.819[view]
Sequence[Download] [View]
Exon(s) number16
Exons & Introns
Length (bp)StrandStartEndPhaseGC (%)Purine (%)Sequence
exon_1384-53351355335518-1,073.43851.563[view]
intron_11180-53339555335134038.64448.475[view]
exon_2135-533382053339540,043.70457.037[view]
intron_284-53337365333819040.47645.238[view]
exon_374-533366253337350,245.94655.405[view]
intron_3107-53335555333661231.77638.318[view]
exon_470-533348553335542,047.14355.714[view]
intron_4122-53333635333484029.50836.066[view]
exon_556-533330753333620,246.42951.786[view]
intron_585-53332225333306235.29435.294[view]
exon_672-533315053332212,243.05656.944[view]
intron_687-53330635333149239.0844.828[view]
exon_795-533296853330622,144.21147.368[view]
intron_797-53328715332967126.80436.082[view]
exon_867-533280453328701,238.80659.701[view]
intron_888-53327165332803235.22740.909[view]
exon_9130-533258653327152,051.53846.154[view]
intron_977-53325095332585025.97440.26[view]
exon_10219-533229053325080,042.00952.511[view]
intron_10547-53317435332289035.10147.166[view]
exon_11140-533160353317420,250.062.143[view]
intron_1169-53315345331602234.78346.377[view]
exon_12175-533135953315332,038.28648.0[view]
intron_12591-53307685331358040.60943.824[view]
exon_1391-533067753307670,140.65959.341[view]
intron_13908-53297695330676132.26951.872[view]
exon_14158-532961153297681,048.10154.43[view]
intron_14122-53294895329610033.60747.541[view]
exon_15189-532930053294880,044.97455.026[view]
intron_1571-53292295329299033.80342.254[view]
exon_16154-532907553292280,-138.31255.844[view]
Sequence[Download] [View]
Phospho-sites: [View in new window]

Ubiquitin and ubiquitin-like conjugation: No result
Eukaryotic protein kinases and protein phosphatases: No result
Gene Ontology:
Biological Process
GO:0008152metabolic process
GO:0009987cellular process
GO:0006464protein modification process
Molecular Function
GO:0016301kinase activity
GO:0000166nucleotide binding
Plant Ontology:
No related terms
Trait Ontology:
No related terms
Enviroment Ontology:
No related terms
QTL/Genesp1a
Major categoryMorphological trait
Category of object characterPanicle/flower
Characterspikelets per panicle
MarkerMixture
No of marker for position determination2
LocationChr1: 4796155-5760871
Mapping methodC)Interval
PopulationRIL
No of plants241
LOD14.2
Parent AZhenshan 97
Parent BMinghui 63
Direction ( Parent )A
Explained variance5.79
Additive effect7.04
Year2001
Genes located in QTL (97):
Gene AccessionLocation
Os01g0198200Chr1: 5329063-5335518 (-)
Os01g0198100Chr1: 5320625-5324478 (-)
Os01g0197100Chr1: 5236623-5244023 (+)
Os01g0192700Chr1: 4982399-4985113 (+)
Os01g0197150Chr1: 5236643-5243998 (-)
Os01g0195300Chr1: 5128137-5128696 (-)
Os01g0197900Chr1: 5288136-5292958 (-)
Os01g0190300Chr1: 4816831-4818958 (+)
Os01g0191100Chr1: 4852435-4854387 (+)
Os01g0200200Chr1: 5424059-5424581 (+)
Os01g0194000Chr1: 5037239-5039252 (-)
Os01g0195100Chr1: 5103843-5108907 (-)
Os01g0195066Chr1: 5102129-5102343 (+)
Os01g0199350Chr1: 5386995-5387420 (+)
Os01g0199400Chr1: 5389837-5394412 (-)
Os01g0191700Chr1: 4905609-4909339 (+)
Os01g0198702Chr1: 5361440-5362677 (-)
Os01g0191400Chr1: 4887954-4891334 (-)
Os01g0190500Chr1: 4826590-4828733 (+)
Os01g0193400Chr1: 5016279-5020150 (+)
Os01g0190400Chr1: 4820155-4823129 (-)
Os01g0192201Chr1: 4957649-4958149 (-)
Os01g0196133Chr1: 5196418-5197056 (+)
Os01g0195700Chr1: 5148879-5149201 (+)
Os01g0198000Chr1: 5307415-5317280 (-)
Os01g0191200Chr1: 4872158-4873806 (-)
Os01g0197200Chr1: 5247340-5251192 (-)
Os01g0196600Chr1: 5218573-5220335 (+)
Os01g0201275Chr1: 5530408-5531111 (+)
Os01g0200350Chr1: 5426719-5431404 (+)
Os01g0191500Chr1: 4891518-4896876 (+)
Os01g0200500Chr1: 5442866-5446246 (+)
Os01g0201300Chr1: 5533238-5534034 (+)
Os01g0199351Chr1: 5387468-5387719 (-)
Os01g0193800Chr1: 5027043-5027324 (+)
Os01g0192800Chr1: 4991513-4993868 (+)
Os01g0199800Chr1: 5403848-5404567 (-)
Os01g0191800Chr1: 4909990-4913696 (-)
Os01g0191150Chr1: 4869090-4869415 (-)
Os01g0197500Chr1: 5264691-5266158 (-)
Os01g0197700Chr1: 5270449-5275585 (-)
Os01g0195967Chr1: 5171227-5171914 (+)
Os01g0191000Chr1: 4848843-4850992 (-)
Os01g0190000Chr1: 4800233-4802174 (+)
Os01g0194600Chr1: 5085833-5086504 (+)
Os01g0192500Chr1: 4979098-4980028 (-)
Os01g0200300Chr1: 5426582-5429390 (-)
Os01g0194300Chr1: 5060605-5065209 (-)
Os01g0192600Chr1: 4982182-4985143 (-)
Os01g0193700Chr1: 5022112-5025748 (+)
Os01g0192900Chr1: 5002454-5004321 (-)
Os01g0194200Chr1: 5053133-5055753 (-)
Os01g0193250Chr1: 5014697-5015197 (-)
Os01g0192101Chr1: 4949849-4951508 (+)
Os01g0199900Chr1: 5406050-5412737 (+)
Os01g0200700Chr1: 5478545-5479749 (+)
Os01g0197450Chr1: 5261189-5263102 (-)
Os01g0192000Chr1: 4949133-4951123 (-)
Os01g0189800Chr1: 4796155-4798454 (-)
Os01g0193900Chr1: 5030157-5038482 (+)
Os01g0199300Chr1: 5384196-5385088 (+)
Os01g0192300Chr1: 4971466-4973555 (-)
Os01g0201000Chr1: 5498215-5499226 (+)
Os01g0201250Chr1: 5529876-5531014 (-)
Os01g0196500Chr1: 5213979-5216701 (-)
Os01g0197350Chr1: 5256634-5257053 (+)
Os01g0197400Chr1: 5258298-5260964 (+)
Os01g0198900Chr1: 5373630-5374681 (+)
Os01g0195200Chr1: 5109949-5112457 (-)
Os01g0201500Chr1: 5543648-5544544 (-)
Os01g0201200Chr1: 5510522-5514454 (-)
Os01g0200000Chr1: 5413595-5416778 (-)
Os01g0193500Chr1: 5018103-5020088 (-)
Os01g0191900Chr1: 4917960-4919224 (-)
Os01g0198250Chr1: 5330676-5333955 (+)
Os01g0195400Chr1: 5131629-5132915 (-)
Os01g0196800Chr1: 5227044-5229966 (+)
Os01g0192550Chr1: 4980670-4981942 (+)
Os01g0195801Chr1: 5149335-5150341 (+)
Os01g0195500Chr1: 5138518-5140925 (-)
Os01g0201100Chr1: 5507567-5509494 (+)
Os01g0200600Chr1: 5454772-5455667 (-)
Os01g0196300Chr1: 5201862-5203996 (+)
Os01g0198500Chr1: 5352505-5353607 (-)
Os01g0195000Chr1: 5099555-5102080 (+)
Os01g0201600Chr1: 5549651-5551003 (-)
Os01g0199700Chr1: 5398321-5402018 (-)
Os01g0199950Chr1: 5410930-5412355 (-)
Os01g0201400Chr1: 5540631-5541520 (-)
Os01g0200950Chr1: 5497443-5498906 (-)
Os01g0199550Chr1: 5390090-5391282 (+)
Os01g0200175Chr1: 5419192-5419973 (+)
Os01g0191300Chr1: 4879215-4885840 (-)
Os01g0193600Chr1: 5021104-5025704 (-)
Os01g0200400Chr1: 5435443-5442646 (-)
Os01g0192401Chr1: 4979116-4979875 (+)
Os01g0200150Chr1: 5414253-5416534 (+)
NCBI Gene:
Unigene:
Refseq:
Uniprot:
Interpro:
Pfam:
EC:
KEGG protein: