Gene AccessionOs01g0198000
LocationChr1: 5307415-5317280 (-)
Length9866 bp
IC4R LinksExpression; Homology; Variation; Literature; Wiki
Organism
SynonymRDR4; LOC_Os01g10140; B1046G12.14; P0419B01.26
Uniprot InfoProtein name synonym:
  • Probable RNA-dependent RNA polymerase 4
  • OsRDR4
Entry name2seq:
  • RDR4_ORYSJ
Sequence[Download] [View]
Exon(s) number11
Exons & Introns
Length (bp)StrandStartEndPhaseGC (%)Purine (%)Sequence
exon_160-5317221531728043.33356.667[view]
intron_185-5317136531722023.52929.412[view]
exon_272-5317064531713547.22244.444[view]
intron_2549-5316515531706334.06242.441[view]
exon_3170-5316345531651438.23547.647[view]
intron_31142-5315203531634437.30347.986[view]
exon_4149-5315054531520240.9452.349[view]
intron_4179-5314875531505335.75436.872[view]
exon_5223-5314652531487441.70453.363[view]
intron_5944-5313708531465130.40347.564[view]
exon_6226-5313482531370741.1551.327[view]
intron_62642-5310840531348138.19147.843[view]
exon_7146-5310694531083940.41154.11[view]
intron_7337-5310357531069330.26741.543[view]
exon_8160-5310197531035638.7555.0[view]
intron_8826-5309371531019632.9349.153[view]
exon_9148-5309223530937043.24347.973[view]
intron_9943-5308280530922232.55646.766[view]
exon_10173-5308107530827945.08756.069[view]
intron_1098-5308009530810640.81640.816[view]
exon_11594-5307415530800845.11853.535[view]
Sequence[Download] [View]
Phospho-sites: [View in new window]

Ubiquitin and ubiquitin-like conjugation: No result
Eukaryotic protein kinases and protein phosphatases: No result
Gene Ontology:
Biological Process
GO:0040029regulation of gene expression, epigenetic
GO:0009987cellular process
Cellular Component
GO:0005575cellular_component
Molecular Function
GO:0016740transferase activity
Plant Ontology:
No related terms
Trait Ontology:
No related terms
Enviroment Ontology:
No related terms
QTL/Genesp1a
Major categoryMorphological trait
Category of object characterPanicle/flower
Characterspikelets per panicle
MarkerMixture
No of marker for position determination2
LocationChr1: 4796155-5760871
Mapping methodC)Interval
PopulationRIL
No of plants241
LOD14.2
Parent AZhenshan 97
Parent BMinghui 63
Direction ( Parent )A
Explained variance5.79
Additive effect7.04
Year2001
Genes located in QTL (97):
Gene AccessionLocation
Os01g0198000Chr1: 5307415-5317280 (-)
Os01g0191200Chr1: 4872158-4873806 (-)
Os01g0197200Chr1: 5247340-5251192 (-)
Os01g0196600Chr1: 5218573-5220335 (+)
Os01g0201275Chr1: 5530408-5531111 (+)
Os01g0200350Chr1: 5426719-5431404 (+)
Os01g0191500Chr1: 4891518-4896876 (+)
Os01g0200500Chr1: 5442866-5446246 (+)
Os01g0201300Chr1: 5533238-5534034 (+)
Os01g0199351Chr1: 5387468-5387719 (-)
Os01g0193800Chr1: 5027043-5027324 (+)
Os01g0192800Chr1: 4991513-4993868 (+)
Os01g0199800Chr1: 5403848-5404567 (-)
Os01g0191800Chr1: 4909990-4913696 (-)
Os01g0191150Chr1: 4869090-4869415 (-)
Os01g0197500Chr1: 5264691-5266158 (-)
Os01g0197700Chr1: 5270449-5275585 (-)
Os01g0195967Chr1: 5171227-5171914 (+)
Os01g0191000Chr1: 4848843-4850992 (-)
Os01g0190000Chr1: 4800233-4802174 (+)
Os01g0194600Chr1: 5085833-5086504 (+)
Os01g0192500Chr1: 4979098-4980028 (-)
Os01g0200300Chr1: 5426582-5429390 (-)
Os01g0194300Chr1: 5060605-5065209 (-)
Os01g0192600Chr1: 4982182-4985143 (-)
Os01g0193700Chr1: 5022112-5025748 (+)
Os01g0192900Chr1: 5002454-5004321 (-)
Os01g0194200Chr1: 5053133-5055753 (-)
Os01g0193250Chr1: 5014697-5015197 (-)
Os01g0192101Chr1: 4949849-4951508 (+)
Os01g0199900Chr1: 5406050-5412737 (+)
Os01g0200700Chr1: 5478545-5479749 (+)
Os01g0197450Chr1: 5261189-5263102 (-)
Os01g0192000Chr1: 4949133-4951123 (-)
Os01g0189800Chr1: 4796155-4798454 (-)
Os01g0193900Chr1: 5030157-5038482 (+)
Os01g0199300Chr1: 5384196-5385088 (+)
Os01g0192300Chr1: 4971466-4973555 (-)
Os01g0201000Chr1: 5498215-5499226 (+)
Os01g0201250Chr1: 5529876-5531014 (-)
Os01g0196500Chr1: 5213979-5216701 (-)
Os01g0197350Chr1: 5256634-5257053 (+)
Os01g0197400Chr1: 5258298-5260964 (+)
Os01g0198900Chr1: 5373630-5374681 (+)
Os01g0195200Chr1: 5109949-5112457 (-)
Os01g0201500Chr1: 5543648-5544544 (-)
Os01g0201200Chr1: 5510522-5514454 (-)
Os01g0200000Chr1: 5413595-5416778 (-)
Os01g0193500Chr1: 5018103-5020088 (-)
Os01g0191900Chr1: 4917960-4919224 (-)
Os01g0198250Chr1: 5330676-5333955 (+)
Os01g0195400Chr1: 5131629-5132915 (-)
Os01g0196800Chr1: 5227044-5229966 (+)
Os01g0192550Chr1: 4980670-4981942 (+)
Os01g0195801Chr1: 5149335-5150341 (+)
Os01g0195500Chr1: 5138518-5140925 (-)
Os01g0201100Chr1: 5507567-5509494 (+)
Os01g0200600Chr1: 5454772-5455667 (-)
Os01g0196300Chr1: 5201862-5203996 (+)
Os01g0198500Chr1: 5352505-5353607 (-)
Os01g0195000Chr1: 5099555-5102080 (+)
Os01g0201600Chr1: 5549651-5551003 (-)
Os01g0199700Chr1: 5398321-5402018 (-)
Os01g0199950Chr1: 5410930-5412355 (-)
Os01g0201400Chr1: 5540631-5541520 (-)
Os01g0200950Chr1: 5497443-5498906 (-)
Os01g0199550Chr1: 5390090-5391282 (+)
Os01g0200175Chr1: 5419192-5419973 (+)
Os01g0191300Chr1: 4879215-4885840 (-)
Os01g0193600Chr1: 5021104-5025704 (-)
Os01g0200400Chr1: 5435443-5442646 (-)
Os01g0192401Chr1: 4979116-4979875 (+)
Os01g0200150Chr1: 5414253-5416534 (+)
Os01g0198200Chr1: 5329063-5335518 (-)
Os01g0198100Chr1: 5320625-5324478 (-)
Os01g0197100Chr1: 5236623-5244023 (+)
Os01g0192700Chr1: 4982399-4985113 (+)
Os01g0197150Chr1: 5236643-5243998 (-)
Os01g0195300Chr1: 5128137-5128696 (-)
Os01g0197900Chr1: 5288136-5292958 (-)
Os01g0190300Chr1: 4816831-4818958 (+)
Os01g0191100Chr1: 4852435-4854387 (+)
Os01g0200200Chr1: 5424059-5424581 (+)
Os01g0194000Chr1: 5037239-5039252 (-)
Os01g0195100Chr1: 5103843-5108907 (-)
Os01g0195066Chr1: 5102129-5102343 (+)
Os01g0199350Chr1: 5386995-5387420 (+)
Os01g0199400Chr1: 5389837-5394412 (-)
Os01g0191700Chr1: 4905609-4909339 (+)
Os01g0198702Chr1: 5361440-5362677 (-)
Os01g0191400Chr1: 4887954-4891334 (-)
Os01g0190500Chr1: 4826590-4828733 (+)
Os01g0193400Chr1: 5016279-5020150 (+)
Os01g0190400Chr1: 4820155-4823129 (-)
Os01g0192201Chr1: 4957649-4958149 (-)
Os01g0196133Chr1: 5196418-5197056 (+)
Os01g0195700Chr1: 5148879-5149201 (+)
NCBI Gene:
Unigene:
Refseq:
Uniprot:
Interpro:
Pfam:
EC:
KEGG protein: