Gene AccessionOs01g0102400
LocationChr1: 139826-141555 (+)
Length1730 bp
IC4R LinksExpression; Homology; Variation; Literature; Wiki
Organism
SynonymP0672D08.43; P0402A09.22; P0455C04.16; OsJ_00019
Uniprot InfoProtein name synonym:
  • Os01g0102400 protein
  • P0402A09.22 protein
  • P0455C04.16 protein
  • Putative uncharacterized protein P0672D08.43
  • Uncharacterized protein
  • cDNA, clone: J075175B02, full insert sequence
Entry name2seq:
  • Q93VF0_ORYSJ
Sequence[Download] [View]
Exon(s) number2
Exons & Introns
Length (bp)StrandStartEndPhaseGC (%)Purine (%)Sequence
exon_181+139826139906-1,-138.27245.679[view]
intron_1213+139907140119-131.92547.418[view]
exon_21436+140120141555-1,-142.20150.766[view]
Sequence[Download] [View]
Phospho-sites: [View in new window]

Ubiquitin and ubiquitin-like conjugation: No result
Eukaryotic protein kinases and protein phosphatases: No result
Gene Ontology:
Biological Process
GO:0009719response to endogenous stimulus
GO:0007165signal transduction
GO:0009058biosynthetic process
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Cellular Component
GO:0005634nucleus
Molecular Function
GO:0003677DNA binding
GO:0003700transcription factor activity
Plant Ontology:
No related terms
Trait Ontology:
No related terms
Enviroment Ontology:
No related terms
QTL/GeneGc
Major categoryOthers
Category of object characterOthers
Characterchlorophyll content
MarkerSSR
No of marker for position determination2
LocationChr1: 85323-1059644
Mapping methodB)Fine
PopulationBC6F2
No of plants300
LOD-
Parent AChongqing 2
Parent BZhenshan 97B
Direction ( Parent )-
Explained variance-
Additive effect-
Year2007
Genes located in QTL (20):
Gene AccessionLocation
Os01g0102600Chr1: 145603-147847 (+)
Os01g0103650Chr1: 187545-188586 (+)
Os01g0102900Chr1: 169390-170316 (-)
Os01g0103000Chr1: 170798-173144 (-)
Os01g0103100Chr1: 178607-180575 (+)
Os01g0101850Chr1: 86211-88583 (-)
Os01g0102400Chr1: 139826-141555 (+)
Os01g0103600Chr1: 186250-190904 (-)
Os01g0101800Chr1: 85337-88844 (+)
Os01g0102700Chr1: 148085-150568 (+)
Os01g0102500Chr1: 141959-144554 (+)
Os01g0102300Chr1: 134300-135439 (+)
Os01g0102000Chr1: 89763-91465 (-)
Os01g0103050Chr1: 172587-175073 (+)
Os01g0102850Chr1: 164577-168921 (+)
Os01g0103700Chr1: 191037-196287 (+)
Os01g0103400Chr1: 185189-185828 (-)
Os01g0102800Chr1: 152853-156449 (+)
Os01g0101900Chr1: 88883-89228 (-)
Os01g0103075Chr1: 178815-180433 (-)
NCBI Gene:
Unigene:
Refseq:
Uniprot:
Interpro:
Pfam:
EC:
KEGG protein: